Claus | Crenshaw | Fadl | Gianola | Kirkpatrick | Khatib | Parrish | Richards | Rosa | Schaefer | Sindelar

Refereed Publications - 2013

Jim Claus
- Claus JR, Du, C. 2013. Nitrite-embedded packaging film effects on fresh and frozen beef color development and stability as influenced by meat age and muscle type. Meat Science 95:526–535.
- Sickler, ML, Claus JR, Marriott N.G., Eigel WE, Wang H. 2013. Antioxidative effects of encapsulated sodium tripolyphosphate and encapsulated sodium acid pyrophosphate in ground beef patties cooked immediately after antioxidant incorporation and stored. Meat Science 94(3): 285-288.
- Sickler, ML, Claus JR, Marriott NG, Eigel WE, Wang H. 2013. Reduction in lipid oxidation by incorporation of encapsulated sodium tripolyphosphate in ground turkey. Meat Science 95(2):376-380.

Thomas Crenshaw
- Crenshaw TD,  Schneider DK, Carlson CS, Parker JB, Sonderman JP, Ward Tl, Wilson ME. 2013. Mineral concentrations in tissues and lesions of osteochondrosis in bones collected from prolific sows across parities 0 through 7. J. Anim. Sci. 91:1255–1269.
- Sivalingam S, Nakada SY, Sehgal PD, Crenshaw TD, Penniston KL. 2013. Dietary hydroxyproline induced calcium oxalate lithiasis and associated renal injury in the porcine model. J Endourol. 27:1493-1498

Amin Fadl
- Shippy DC, Eakley NM, Mikheil DM, Fadl AA. 2014. Role of the flagellar basal-body protein, FlgC, in the binding of Salmonella enterica serovar Enteritidis to host cells. Current Microbiology, 68:621-8.
- Rehl JM, Shippy DC, Eakley NM, Brevik MD, Sand JM, Cook ME, Fadl AA. 2013. GidA expression in Salmonella is modulated under certain environmental conditions. Curr Microbiol 67:279-85.
- Shippy DC, Eakley NM, Mikheil DM, Fadl AA. 2013. Role of the flagellar basal-body protein, FlgC, in the binding of Salmonella enterica serovar Enteritidis to host cells. Current Microbiology, (In press).
- Shippy DC, Eakley NM, Mikheil DM, Fadl AA. 2013. Role of StdA in adhesion of Salmonella enterica serovar Enteritidis phage type 8 to host epithelial cells. Gut Pathogens. 5: 43.
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Daniel Gianola
- K. Haugaard, L. Tusell, P. Perez, D. Gianola, A. C. Whist and B. Heringstad. 2013. Prediction of clinical mastitis outcomes within and between environments using whole-genome markers. Journal of Dairy Science 96: 3986-3993.
- L. Tusell, P. Pérez-Rodríguez, S. Forni, X-L Wu, and D Gianola. 2013. Genome-enabled methods for predicting litter size in pigs: a comparison. Animal 7: 1739-1749.
- D. Gianola, S. Qanbari and H. Simianer. 2013. An evaluation of a novel estimator of linkage disequilibrium. Heredity 111: 275-285.
- D. Gianola. 2013. Priors in whole genome regression: the Bayesian alphabet returns. Genetics 194: 573-596. [HIGHLIGHTED IN GENETICS]
- J. A. Jiménez-Montero, D. Gianola, K. Weigel, R. Alenda, and O. González-Recio. 2013. Assets of imputation to ultra-high density for productive and functional traits. Journal of dairy science 96: 6047-6058.
- H. Okut, X-L Wu, G. J. M Rosa, S. Bauck, B. W. Woodward, R. D. Schnabel, JF Taylor, and D. Gianola. 2013. Predicting expected progeny difference for marbling score in Angus cattle using artificial neural networks and Bayesian regression models. Genetics Selection Evolution 45: 34.
- G. Morota, M. Koyama, G. J. M. Rosa, K. A. Weigel, and D. Gianola. 2013. Predicting complex traits using a diffusion kernel on genetic markers with an application to dairy cattle and wheat data. Genetics Selection Evolution 45: 17.
- G. Morota and D. Gianola. 2013. Evaluation of linkage disequilibrium in wheat with an L1-regularized sparse Markov network. Theoretical and Applied Genetics 126: 1991-2002.
- C. Lehermeier, V. Wimmer, T. Albrecht, H. J. Auinger, D. Gianola, V. J Schmid and  C. C. Schön. 2013. Sensitivity to prior specification in Bayesian genome-based prediction models. Statistical applications in genetics and molecular biology, 1-17.
- BD Valente, GJM Rosa, D Gianola, XL Wu, KA Weigel. 2013. Is structural equation modeling advantageous for the genetic improvement of multiple traits? Genetics 194:561-572. [HIGHLIGHTED IN GENETICS]
- D. Gianola, F. Hospital, E. Verrier. 2012. On the contribution of an additive locus to genetic variance when inheritance is multifactorial with implications on the interpretation of GWAS. Theoretical and Applied Genetics 6: 1457-1472.
- P. Perez-Rodriguez, D. Gianola, K. A. Weigel, G. J. M. Rosa and J. Crossa. 2013. An R package for fitting Bayesian regularized neural networks with applications in animal breeding. Journal of Animal Science 91: 3522-3531.
- X-L Wu, D. Gianola, G. J. M. Rosa and K. A. Weigel. 2013. Meta-analysis of candidate gene effects using Bayesian parametric and mon-Parametric approaches. Journal of Genomics 2: 1-19.
- B. D. Valente, G. Morota, G. J. M. Rosa, D. Gianola and K. Weigel. 2013. The causal meaning of genomic predictors and how it affects the construction and comparison of genome-enabled selection model. arXiv preprint arXiv: 1401. 1165.
- C. Sun, P. M. VanRaden, J. R. O’Connell, K. A. Weigel and D. Gianola. 2013. Mating programs including genomic relationships and dominance effects. Journal of Dairy Science 96: 8014-8023.
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Brian Kirkpatrick
- Zare Y., Shook GE, Collins MT, Kirkpatrick BW. 2013. Evidence of seasonality and birth clusters of Mycobacterium avium subspecies paratuberculosis infection in US dairy herds. Preventive Veterinary Medicine 112(3-4):276-84

Hasan Khatib
- Peñagaricano F, Souza AH, Carvalho PD, Driver AM, Gambra R, Kropp J, Hackbart KS, Luchini D, Shaver RD, Wiltbank MC, and Khatib H (2013) Effect of Maternal Methionine Supplementation on the Transcriptome of Bovine Preimplantation Embryos. PLoS One 8(8):e72302
- Wang X, Li T, Zhao HB, and Khatib H (2013) A mutation in the 3’ untranslated region diminishes microRNA binding and alters expression of the OLR1 gene. J. Dairy Sci. 96: 6525-8528.
- Driver A, Huang W, Kropp J, Peñagaricano F, and Khatib H (2013) Knockdown of CDKN1C (p57kip2) and PHLDA2 results in abnormal development of bovine pre-implantation embryos. PLoS One 8(7): e69490.
- Gambra R, Peñagaricano F, Kropp J, Khateeb K, Weigel KA, Lucey J, and Khatib H (2013) Genomic architecture of bovine kappa-casein and beta-lactoglobulin. J. Dairy Sci. 96 :5333–5343
- Driver A, and Khatib H (2013) Heat shock proteins: Potentially powerful markers for preimplantation embryonic development and fertility in livestock species. J Anim Sci. 91(3):1154-61. (Invited Review)
- Lan X, Cretney EC, Kropp J, Khateeb K, Berg MA, Peñagaricano F, Magness R, Radunz AE, and Khatib H (2013) Maternal diet during pregnancy induces transcriptomic and epigenomic changes in fetal tissues in sheep. Front. Gene. 4:49.
- Lan XY, Peñagaricano F, DeJung L, Weigel KA, and Khatib H (2013) A missense mutation in the PROP1 gene affects male fertility and milk production traits in US Holstein population. J Dairy Sci. 96 :1255–1257.

John Parrish
- Siddiqui MA, Das ZC, Bhattacharjee J, Rahman MM, Islam MM, Haque MA, Parrish JJ, Shamsuddin M. 2013. Factors affecting the first service conception rate of cows in smallholder dairy farms in Bangladesh. Reprod Domest Anim. Jun;48(3):500-505.
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Mark Richards
- Park, SY, Undeland, I, Sannaveerappa, T, Richards MP. (2013). Novel interactions of caffeic acid with different hemoglobins: Effects on discoloration and lipid oxidation in different washed muscles. Meat Science, 95, 110-117.
- Cai H, Grunwald EW, Park SY, Lei B, Richards MP. (2013) Lipid oxidation in trout muscle is strongly inhibited by a protein that specifically binds hemin released from hemoglobin. J Agric Food Chem. 61, 4180-4187.
- Richards MP. (2013). Redox reactions of myoglobin. Antioxid. Redox. Signal. 18, 2342-2351.

Guilherme Rosa
- Abdalla, E. A., Rosa, G. J. M., Weigel, K. A. and Byrem, T. Genetic analysis of leukosis incidence in United States Holstein and Jersey populations. Journal of Dairy Science 96: 6022-6029, 2013.
- Okut, H., Wu, X.-L., Rosa, G. J. M., Bauck, S., Woodward, B. W., Schnabel, R. D., Taylor, J. F. and Gianola, D. Predicting expected progeny difference for marbling score in Angus cattle using artificial neural networks and Bayesian regression models. Genetics Selection Evolution 45: 34, 2013.
- Piccinato, C. A., Rosa, G. J. M., N’Jai, A. U., Jefcoate, C. R. and Wiltbank, M. C. Estradiol and progesterone exhibit similar patterns of hepatic gene expression regulation in the bovine model. PLoS One 8(9): e73552, 2013.
- Savegnago, R. P, Rosa, G. J. M., Valente, B. D., Herrera, L. G. G., Carneiro, R. L. R., Sesana, R. C., El Faro, L. and Munari, D. P. Estimates of genetic parameters and eigenvector indices for milk production of Holstein cows. Journal of Dairy Science 96:7284-7293, 2013.
- Pérez-Rodríguez, P., Gianola, D., Weigel, K. A., Rosa, G. J. M. and Crossa, J. An R package for fitting Bayesian regularized neural networks with applications in animal breeding. Journal of Animal Science 91:3522-3531, 2013.
- Valente, B. D., Rosa, G. J. M., Gianola, D., Wu, X.-L. and Weigel, K. A.  Is structural equation modeling advantageous for the genetic improvement of multiple traits? Genetics 194: 561-572, 2013.
- Morota, G., Koyama, M., Rosa, G. J. M., Weigel, K. A. and Gianola, D. Predicting complex traits using a diffusion kernel on genetic markers with an application to dairy cattle and wheat data. Genetics Selection Evolution 45: 17, 2013.
- Rosa, G. J. M. and Valente B. D. Inferring causal effects from observational data in livestock. Journal of Animal Science 91: 553-564, 2013.
- Iager, A. E., Kocabas, A. M., Otu, H. H., Ruppel, P., Langerveld, A., Schnarr, P., Suarez, M., Jarrett, J. C., Conaghan, J., Rosa, G. J. M., Fernandez, E., Rawlins, R. G., Cibelli, J. B. and Crosby, J. A. Identification of a novel gene set in human cumulus cells predictive of an oocyte's pregnancy potential. Fertility and Sterility 99(3): 745-752, 2013.
- Peñagaricano, F., Weigel, K. A., Rosa, G. J. M. and Khatib, H. Inferring quantitative trait pathways associated with bull fertility from a genome-wide association study. Frontiers in Genetics 3: 307, 2013. doi: 10.3389/fgene.2012.00307.
- Caetano, S. L., Rosa, G. J. M., Savegnago, R. P., Ramos, S. B., Bezerra, L. A. F., Lobo, R. B., de Paz, C. C. P. and Munari, D. P. Characterization of the variable cow’s age at last calving as a measurement of longevity by using the Kaplan–Meier estimator and the Cox model. Animal 7(4): 540-546, 2013.
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Daniel Schaefer
- Lin, M., D. M. Schaefer, G. Q. Zhao and Q. X. Meng. 2013. Effects of nitrate adaptation by rumen inocula donors and substrate fiber proportion on in vitro nitrate disappearance, methanogenesis, and rumen fermentation acid. Animal 7:1099-1105.
- Lin, M., W. Guo, Q. Meng, D. M. Stevenson, P. J. Weimer and D. M. Schaefer. 2013. Changes in Rumen Bacterial Community Composition in Steers in Response to Dietary Nitrate. Appl. Microbiol. Biotechnol. 97: 8719-8727. DOI 10.1007/s00253-013-5143-z
- Shinners, K. J., G. C. Boettcher, D. M. Schaefer and A. M. Troutman. 2013. Cattle preference for hay from round bales with different wrap types. Prof. Anim. Sci. 29:665-670.

Jeff Sindelar
- McDonnell, L.M., K. A. Glass, and J.J. Sindelar. 2013. Identifying Ingredients that Inhibit Listeria monocytogenes for Use in Natural, Organic, and Clean-Label Ready-to-Eat Meat and Poultry Products. Journal of Food Protection 76(8) 1366-1376.
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